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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THCA cis rs13191362 1 rs67025553 chr6:163011552 PACRG chr6:163148164-163736523:+ 0.45 7 8.92E-12 Body mass index
THCA cis rs891378 1 rs6702997 chr1:207502347 CD55 chr1:207494817-207534309:+ 0.15 6.66 7.54E-11 Spherical equivalent (joint main effects and education interaction)
THCA cis rs891378 1 rs6703002 chr1:207502372 CD55 chr1:207494817-207534309:+ 0.15 6.6 1.11E-10 Spherical equivalent (joint main effects and education interaction)
THCA cis rs7523455 1 rs6703129 chr1:19324092 TMCO4 chr1:20008707-20126758:- -0.15 -3.36 0.00083 Methotrexate phramacokinetics (acute lymphoblastic leukemia)
THCA cis rs6684514 1 rs67034206 chr1:156270260 BGLAP chr1:156182784-156213112:+ 0.23 5.55 4.68E-8 Mean corpuscular hemoglobin concentration;Glycated hemoglobin levels
THCA cis rs6684514 1 rs67034206 chr1:156270260 C1orf85 chr1:156259882-156265449:- -0.17 -4.16 3.82E-5 Mean corpuscular hemoglobin concentration;Glycated hemoglobin levels
THCA cis rs6684514 1 rs67034206 chr1:156270260 CCT3 chr1:156278752-156308195:- -0.33 -7.21 2.16E-12 Mean corpuscular hemoglobin concentration;Glycated hemoglobin levels
THCA cis rs891378 1 rs6703857 chr1:207443553 CD55 chr1:207494817-207534309:+ 0.14 6.55 1.46E-10 Spherical equivalent (joint main effects and education interaction)
THCA cis rs4915077 1 rs6703923 chr1:108352252 VAV3 chr1:108113782-108507545:- 0.45 7.37 7.73E-13 Hypothyroidism
THCA cis rs13191362 1 rs67042566 chr6:163006541 PACRG chr6:163148164-163736523:+ 0.46 7.08 5.13E-12 Body mass index
THCA cis rs13191362 1 rs67046187 chr6:163068532 PACRG chr6:163148164-163736523:+ 0.52 7.34 9.39E-13 Body mass index
THCA cis rs9677476 1 rs6704770 chr2:232109816 ARMC9 chr2:232063342-232238606:+ 0.43 10.4 5.65E-23 Food antigen IgG levels
THCA cis rs4665809 1 rs6704930 chr2:26325705 GPR113 chr2:26531041-26569685:- -0.42 -6.71 5.42E-11 Gut microbiome composition (summer)
THCA cis rs2241437 1 rs6705122 chr2:86176258 LOC90784 chr2:86247339-86250991:- -0.29 -3.39 0.000754 Response to methylphenidate treatment in attention-deficit/hyperactivity disorder (blood pressure)
THCA cis rs2241437 1 rs6705122 chr2:86176258 POLR1A chr2:86253453-86333278:- -0.21 -3.35 0.000878 Response to methylphenidate treatment in attention-deficit/hyperactivity disorder (blood pressure)